Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs2916692 chr8:6219598 C/T 8.22E-7 119 44.38 32.7 12.78 KM Plot
THYM rs2916694 chr8:6219368 G/T 8.22E-7 119 44.38 32.7 12.78 KM Plot
THYM rs2917067 chr8:131751836 G/A 0 117 44.38 26.57 2.9 KM Plot
THYM rs2920636 chr8:6219725 A/G 8.22E-7 119 44.38 32.7 12.78 KM Plot
THYM rs2922882 chr8:6391659 C/G 0.000113 119 18.82 35 42.82 KM Plot
THYM rs2922885 chr8:6387938 G/T 1.8E-8 117 42.82 31.72 12.63 KM Plot
THYM rs293784 chr3:9827574 G/A 1.07E-5 116 36.03 52.3 33.25 KM Plot
THYM rs293788 chr3:9830045 T/G 1.07E-5 116 36.03 52.3 33.25 KM Plot
THYM rs2938674 chr15:78757913 C/A 3.97E-5 116 42.9 42.47 26 KM Plot
THYM rs2941101 chr8:131728403 A/C 0 119 42.9 27.2 2.9 KM Plot
THYM rs2941103 chr8:131733066 T/G 0 119 42.9 27.2 2.9 KM Plot
THYM rs2941104 chr8:131733411 C/T 0 119 42.9 27.2 2.9 KM Plot
THYM rs2949682 chr2:30670037 T/C 7.61E-14 117 38.58 45.87 12.93 KM Plot
THYM rs2954694 chr8:131729966 C/T 0 119 42.9 27.2 2.9 KM Plot
THYM rs2954697 chr8:131742025 G/C 0 119 42.9 27.2 2.9 KM Plot